STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
phoR_12Alkaline phosphatase synthesis sensor protein PhoR. (589 aa)    
Predicted Functional Partners:
srrA_8
Transcriptional regulatory protein SrrA.
 
 0.969
srrA_5
Transcriptional regulatory protein SrrA.
  
 0.869
srrA_6
Transcriptional regulatory protein SrrA.
  
 0.869
srrA_4
Transcriptional regulatory protein SrrA.
  
 0.867
hssR_2
Heme response regulator HssR.
  
 0.867
phoP_1
Alkaline phosphatase synthesis transcriptional regulatory protein PhoP.
  
 0.866
yycF_4
Transcriptional regulatory protein YycF.
  
 0.865
walR_3
Transcriptional regulatory protein WalR.
  
 0.864
walR_2
Transcriptional regulatory protein WalR.
  
 0.862
phoP_2
Alkaline phosphatase synthesis transcriptional regulatory protein PhoP.
  
 0.861
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
Server load: low (38%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.