STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yicI_2Alpha-xylosidase; Belongs to the glycosyl hydrolase 31 family. (783 aa)    
Predicted Functional Partners:
bglY
Beta-galactosidase BglY.
 
  
 0.690
araQ_11
L-arabinose transport system permease protein AraQ.
       0.588
araP_5
L-arabinose transport system permease protein AraP.
       0.576
lipO
Lipoprotein LipO precursor.
 
  
 0.574
bglK_1
Beta-glucoside kinase.
  
 
 0.543
bglK_2
Beta-glucoside kinase.
  
 
 0.543
xynA
Endo-1,4-beta-xylanase A precursor; Belongs to the glycosyl hydrolase 11 (cellulase G) family.
 
   
 0.537
malQ_1
4-alpha-glucanotransferase.
    
 0.490
malQ_2
4-alpha-glucanotransferase.
    
 0.490
AQR94478.1
Xyloglucanase precursor.
  
     0.484
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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