STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
spoIVFBStage IV sporulation protein FB. (286 aa)    
Predicted Functional Partners:
spoIIID
Stage III sporulation protein D.
   
  
 0.732
spoVG
Putative septation protein SpoVG; Could be involved in septation.
      
 0.692
spoIIIAB
Stage III sporulation protein SpoAB.
  
  
 0.608
AQR97647.1
Hypothetical protein.
       0.583
spoIVB
SpoIVB peptidase precursor.
  
   
 0.573
yunB
Sporulation protein YunB.
  
   
 0.567
AQR97645.1
Hypothetical protein.
       0.563
spoIIM
Stage II sporulation protein M.
 
  
 0.555
mreD
Rod shape-determining protein MreD.
 
     0.555
AQR97620.1
Hypothetical protein.
 
     0.552
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.