Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
spoIVFBStage IV sporulation protein FB. (286 aa)    
Predicted Functional Partners:
spoIIID
Stage III sporulation protein D.
   
  
 0.724
spoIIIAB
Stage III sporulation protein SpoAB.
  
  
 0.662
spoIIM
Stage II sporulation protein M.
 
  
 0.592
spoVG
Putative septation protein SpoVG; Could be involved in septation.
      
 0.586
yunB
Sporulation protein YunB.
  
   
 0.582
AQR97645.1
Hypothetical protein.
       0.563
AQR97647.1
Hypothetical protein.
       0.558
glgA_2
Glycogen synthase; Synthesizes alpha-1,4-glucan chains using ADP-glucose.
  
  
 0.555
spoIVB
SpoIVB peptidase precursor.
  
   
 0.538
AQR93632.1
Calcium-transporting ATPase 1.
 
    0.530
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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