Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
mepH_3Murein DD-endopeptidase MepH precursor. (197 aa)    
Predicted Functional Partners:
mepH_1
Murein DD-endopeptidase MepH precursor.
 
 
0.689
lytG
Exo-glucosaminidase LytG precursor.
 
 
 0.667
iap_2
Putative endopeptidase p60 precursor.
 
 
0.665
iap_1
Putative endopeptidase p60 precursor.
 
 
0.661
toxB_1
Toxin B.
  
 
 0.656
AQR96483.1
Hypothetical protein.
  
 
 0.656
ykfA_1
Putative murein peptide carboxypeptidase.
  
 
 0.655
mccF
Microcin C7 self-immunity protein MccF.
  
 
 0.655
ykfA_2
Putative murein peptide carboxypeptidase.
  
 
 0.655
murC_1
UDP-N-acetylmuramate--L-alanine ligase; Cell wall formation; Belongs to the MurCDEF family.
  
 
 0.632
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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