Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AQR97664.1Phage shock protein A homolog. (217 aa)    
Predicted Functional Partners:
AQR93829.1
Hypothetical protein.
  
 
 0.885
AQR97318.1
Hypothetical protein.
  
 
 0.885
AQR97665.1
Hypothetical protein.
       0.810
barA_2
Signal transduction histidine-protein kinase BarA.
    
 
 0.725
rpfC_1
Sensory/regulatory protein RpfC.
    
 
 0.711
rpfC_2
Sensory/regulatory protein RpfC.
    
 
 0.711
AQR94167.1
SPFH domain / band 7 family protein.
  
  
 0.703
norR2_1
Nitric oxide reductase transcription regulator NorR2.
   
 
 0.632
luxO_1
Luminescence regulatory protein LuxO.
   
 
 0.632
norR2_2
Nitric oxide reductase transcription regulator NorR2.
   
 
 0.632
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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