Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AQR97667.1Sporulation inhibitor KapD. (301 aa)    
Predicted Functional Partners:
mutS_3
DNA mismatch repair protein MutS.
 
     0.756
bepA
Beta-barrel assembly-enhancing protease.
  
     0.718
AQR96062.1
Dolichyl-phosphate-mannose-protein mannosyltransferase.
  
     0.709
AQR97666.1
CBS domain protein.
 
     0.707
fliK
Flagellar hook-length control protein FliK.
  
     0.700
AQR94225.1
Hypothetical protein.
  
     0.695
AQR93814.1
Hypothetical protein.
  
     0.673
AQR93772.1
Hypothetical protein.
  
     0.665
toxA_6
Toxin A.
  
     0.659
dnaQ
DNA polymerase III subunit epsilon.
  
  
 0.646
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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