STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gmuRHTH-type transcriptional regulator GmuR. (236 aa)    
Predicted Functional Partners:
lldR
Putative L-lactate dehydrogenase operon regulatory protein.
  
  
 0.785
nagA
N-acetylglucosamine-6-phosphate deacetylase.
  
  
 0.727
treR_2
Trehalose operon transcriptional repressor.
  
     0.703
lutR_3
HTH-type transcriptional regulator LutR.
  
  
0.571
lutR_1
HTH-type transcriptional regulator LutR.
  
  
0.566
mcbR_2
HTH-type transcriptional regulator McbR.
  
   
 0.541
sacX_2
Negative regulator of SacY activity.
 
  
 0.514
lacR_1
HTH-type transcriptional regulator LacR.
  
   
 0.502
ccpA_6
Catabolite control protein A.
  
   
 0.494
melR_1
Melibiose operon regulatory protein.
  
  
 0.475
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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