STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rafA_3Alpha-galactosidase. (742 aa)    
Predicted Functional Partners:
cbgA_2
Beta-galactosidase.
 
 
 0.967
ebgA
Evolved beta-galactosidase subunit alpha.
 
 
 0.959
bglY
Beta-galactosidase BglY.
 
  
 0.943
scrB
Sucrose-6-phosphate hydrolase; Enables the bacterium to metabolize sucrose as a sole carbon source; Belongs to the glycosyl hydrolase 32 family.
 
  
 0.930
lacZ
Beta-galactosidase; Belongs to the glycosyl hydrolase 2 family.
 
 
 0.928
agaA
Alpha-galactosidase A precursor.
    
 0.925
mro
Aldose 1-epimerase precursor; Converts alpha-aldose to the beta-anomer.
  
 
 0.917
AQR96593.1
Alpha-xylosidase BoGH31A precursor; Belongs to the glycosyl hydrolase 31 family.
    
 0.910
AQR97326.1
Alpha-xylosidase BoGH31A precursor; Belongs to the glycosyl hydrolase 31 family.
    
 0.910
AQR97328.1
Alpha-xylosidase BoGH31A precursor; Belongs to the glycosyl hydrolase 31 family.
    
 0.910
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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