STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
adaA_4Bifunctional transcriptional activator/DNA repair enzyme AdaA. (293 aa)    
Predicted Functional Partners:
araC_1
Arabinose operon regulatory protein.
 
   
 0.784
btr_3
HTH-type transcriptional activator Btr.
  
     0.755
soxS
Regulatory protein SoxS.
  
     0.745
rhaS_6
HTH-type transcriptional activator RhaS.
  
     0.741
marA
Multiple antibiotic resistance protein MarA.
  
     0.730
melR_2
Melibiose operon regulatory protein.
  
     0.726
pchR
Regulatory protein PchR.
  
     0.635
fliM
Flagellar motor switch protein FliM.
  
 
 0.621
tetD_2
Transposon Tn10 TetD protein.
  
     0.595
cheA_1
Chemotaxis protein CheA.
  
 
 0.585
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.