Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AQR97693.1Beta-1,4-mannooligosaccharide phosphorylase. (338 aa)    
Predicted Functional Partners:
msmE_4
Multiple sugar-binding protein precursor.
 
   
 0.770
AQR97691.1
Hypothetical protein.
 
  
 0.683
cytR_2
HTH-type transcriptional repressor CytR.
 
   
 0.681
lacF_4
Lactose transport system permease protein LacF.
 
   
 0.674
araQ_12
L-arabinose transport system permease protein AraQ.
 
   
 0.658
celE
Endoglucanase E precursor.
  
  
 0.611
cbgA_1
Beta-galactosidase; Belongs to the glycosyl hydrolase 2 family.
 
    0.527
AQR96758.1
Bacterial extracellular solute-binding protein.
 
   
 0.514
yvyI
Putative mannose-6-phosphate isomerase YvyI.
 
   
 0.488
gmuF
Putative mannose-6-phosphate isomerase GmuF.
 
   
 0.481
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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