STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dgoTD-galactonate transporter. (434 aa)    
Predicted Functional Partners:
yecD
Isochorismatase family protein YecD.
 
  
 0.566
AQR95494.1
Hypothetical protein.
  
  
 0.558
AQR95496.1
Hypothetical protein.
  
  
 0.558
AQR96553.1
RDD family protein.
  
  
 0.501
AQR94589.1
Putative transporter.
  
  
 0.489
aroE_2
Shikimate dehydrogenase; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA).
  
  
 0.485
ydiM
Inner membrane transport protein YdiM.
  
  
 0.471
ycdT_2
Putative diguanylate cyclase YcdT.
  
  
 0.466
grsB
Gramicidin S synthase 2.
     
 0.458
AQR94629.1
Phenolphthiocerol synthesis polyketide synthase type I Pks15/1.
  
  
 0.453
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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