STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pemA_2Pectinesterase A precursor. (361 aa)    
Predicted Functional Partners:
pelX
Pectate disaccharide-lyase precursor.
  
 0.978
pgl_2
Polygalacturonase; Belongs to the glycosyl hydrolase 28 family.
 
  
 0.925
pemA_1
Pectinesterase A precursor.
  
  
 
0.913
rhgT
Rhamnogalacturonan acetylesterase RhgT.
  
 0.909
yteR
Unsaturated rhamnogalacturonyl hydrolase YteR.
 
  
 0.847
pelL_2
Pectate lyase L precursor.
 
  
 0.821
pel
Pectate trisaccharide-lyase precursor.
  
 0.795
pelL_3
Pectate lyase L precursor.
 
  
 0.786
pelL_1
Pectate lyase L precursor.
 
  
 0.771
pelL_4
Pectate lyase L precursor.
 
  
 0.770
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.