STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQR97727.1Hypothetical protein. (458 aa)    
Predicted Functional Partners:
AQR96037.1
Hypothetical protein.
 
     0.750
AQR95018.1
Hypothetical protein.
  
     0.695
AQR95641.1
Multicopper oxidase.
  
     0.655
bepA
Beta-barrel assembly-enhancing protease.
 
  
 0.600
AQR93491.1
Hypothetical protein.
  
     0.580
AQR94430.1
Glyoxalase-like domain protein.
  
     0.559
AQR97909.1
Sporulation sigma factor SigF.
  
     0.534
AQR93405.1
Hypothetical protein.
  
     0.527
AQR97454.1
ABC-2 family transporter protein.
  
   
 0.505
AQR93297.1
Hypothetical protein.
  
     0.500
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.