Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AQR97739.1Hypothetical protein. (259 aa)    
Predicted Functional Partners:
AQR97738.1
ATPase family.
 
     0.917
AQR97737.1
Hypothetical protein.
 
     0.897
AQR95035.1
Hypothetical protein.
  
     0.726
AQR93234.1
Endodeoxyribonuclease RusA.
  
     0.717
AQR94986.1
Hypothetical protein.
  
     0.680
yjbM
GTP pyrophosphokinase YjbM.
       0.640
AQR97523.1
Tetratricopeptide repeat protein.
  
     0.605
fliK
Flagellar hook-length control protein FliK.
  
     0.597
AQR97735.1
Hypothetical protein.
  
     0.580
ywaC_1
GTP pyrophosphokinase YwaC.
 
     0.566
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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