Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
tlpSmall, acid-soluble spore protein Tlp; Belongs to the Tlp family. (75 aa)    
Predicted Functional Partners:
AQR97749.1
Coat F domain protein.
 
  
 0.814
AQR97751.1
Coat F domain protein.
 
  
 0.800
hrp1
Hypoxic response protein 1.
 
    0.665
aadK
Aminoglycoside 6-adenylyltransferase.
  
     0.628
AQR98175.1
Hypothetical protein.
  
     0.583
spoIIM
Stage II sporulation protein M.
  
   
 0.572
AQR95047.1
Hypothetical protein.
  
     0.571
spmB
Spore maturation protein B.
  
   
 0.507
spoIIIAD
Stage III sporulation protein AC/AD protein family protein.
  
   
 0.502
AQR93458.1
Hypothetical protein.
  
     0.501
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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