STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQR97749.1Coat F domain protein. (90 aa)    
Predicted Functional Partners:
tlp
Small, acid-soluble spore protein Tlp; Belongs to the Tlp family.
 
  
 0.805
AQR97750.1
Hypothetical protein.
  
  
 0.799
AQR97748.1
Hypothetical protein.
       0.731
AQR97751.1
Coat F domain protein.
 
    
0.709
yoaJ
expansin-YoaJ precursor.
  
     0.516
AQR94686.1
Hypothetical protein.
  
     0.449
AQR94472.1
MarR family protein.
  
    0.427
AQR98175.1
Hypothetical protein.
  
     0.427
AQR93114.1
Hypothetical protein.
  
     0.423
AQR96024.1
Hypothetical protein.
  
     0.415
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.