Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AQR97751.1Coat F domain protein. (99 aa)    
Predicted Functional Partners:
tlp
Small, acid-soluble spore protein Tlp; Belongs to the Tlp family.
 
  
 0.800
AQR97750.1
Hypothetical protein.
  
  
 0.789
AQR97749.1
Coat F domain protein.
 
    
0.683
AQR97748.1
Hypothetical protein.
       0.572
AQR97909.1
Sporulation sigma factor SigF.
  
     0.481
yoaJ
expansin-YoaJ precursor.
  
     0.471
ubiG_2
Ubiquinone biosynthesis O-methyltransferase.
  
    0.466
AQR97588.1
Hypothetical protein.
  
     0.460
AQR93114.1
Hypothetical protein.
  
     0.457
AQR98175.1
Hypothetical protein.
  
     0.444
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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