STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQR97753.1Acetyltransferase (GNAT) family protein. (154 aa)    
Predicted Functional Partners:
AQR97752.1
YCII-related domain protein.
       0.752
yunB
Sporulation protein YunB.
  
    0.721
tsaB
tRNA threonylcarbamoyladenosine biosynthesis protein TsaB.
  
 0.608
AQR94009.1
PRC-barrel domain protein.
  
     0.608
AQR97458.1
Cupin domain protein.
  
 
  0.563
lysN_4
2-aminoadipate transaminase.
     
 0.552
AQR96522.1
2',5' RNA ligase family.
 
     0.536
AQR94437.1
Hypothetical protein.
  
   0.521
AQR96020.1
Zinc-responsive transcriptional regulator.
 
    0.495
baeS_2
Signal transduction histidine-protein kinase BaeS.
  
     0.480
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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