STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lysN_42-aminoadipate transaminase. (447 aa)    
Predicted Functional Partners:
pheA
P-protein.
  
 
 0.739
AQR93697.1
Putative GTP cyclohydrolase 1 type 2.
   
    0.553
AQR97752.1
YCII-related domain protein.
       0.548
AQR97753.1
Acetyltransferase (GNAT) family protein.
     
 0.547
ilvC_2
Ketol-acid reductoisomerase.
    
 0.522
asnO
Asparagine synthetase 3.
  
 
 0.498
thrC
Threonine synthase.
 
 
  0.487
ilvK
Branched-chain-amino-acid aminotransferase 2.
  
 0.473
ilvE
Putative branched-chain-amino-acid aminotransferase.
  
 0.469
dat_1
D-alanine aminotransferase.
  
 0.467
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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