STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lysN_42-aminoadipate transaminase. (447 aa)    
Predicted Functional Partners:
pheA
P-protein.
  
 
 0.756
ilvC_2
Ketol-acid reductoisomerase.
    
 0.610
AQR97753.1
Acetyltransferase (GNAT) family protein.
     
 0.552
AQR97752.1
YCII-related domain protein.
       0.548
AQR93697.1
Putative GTP cyclohydrolase 1 type 2.
   
    0.517
lysC
Aspartate kinase Ask_LysC; Belongs to the aspartokinase family.
   
 
 0.508
yclM
Aspartokinase 3; Belongs to the aspartokinase family.
   
 
 0.508
thrC
Threonine synthase.
 
 
  0.487
hom
Homoserine dehydrogenase.
   
 0.456
ilvE
Putative branched-chain-amino-acid aminotransferase.
  
 0.442
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.