STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
exuR_2Putative HTH-type transcriptional repressor ExuR. (333 aa)    
Predicted Functional Partners:
gltB_2
Ferredoxin-dependent glutamate synthase 1.
    
 
 0.690
grsB
Gramicidin S synthase 2.
    
 
 0.616
AQR97757.1
Divergent AAA domain protein.
       0.603
ptsH
Phosphocarrier protein HPr.
   
 
 0.580
rbsK
Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.
 
 
 0.483
yjfF
Inner membrane ABC transporter permease protein YjfF; Belongs to the binding-protein-dependent transport system permease family.
  
 
 0.458
ytfT
Inner membrane ABC transporter permease protein YtfT; Belongs to the binding-protein-dependent transport system permease family.
  
 
 0.458
alsB
D-allose-binding periplasmic protein precursor.
 
 
 0.447
ydaM_2
Putative diguanylate cyclase YdaM.
       0.445
pyk_1
Pyruvate kinase; Belongs to the pyruvate kinase family.
    
 
 0.440
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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