STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
epsJ_3Putative glycosyltransferase EpsJ. (327 aa)    
Predicted Functional Partners:
AQR97768.1
O-antigen ligase.
  
  
 0.764
pglF
UDP-N-acetyl-alpha-D-glucosamine C6 dehydratase.
  
  
 0.753
epsE_2
Putative glycosyltransferase EpsE.
  
     0.616
AQR97767.1
Hypothetical protein.
  
 0.612
wcaJ_2
UDP-glucose:undecaprenyl-phosphate glucose-1-phosphate transferase.
 
  
 0.605
licD
LicD family protein.
   
 0.575
rfbD
UDP-galactopyranose mutase precursor.
  
 0.573
epsF_1
Putative glycosyltransferase EpsF.
 
 0.567
galE_1
UDP-glucose 4-epimerase.
 
  
 0.563
lnpD
UDP-glucose 4-epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family.
 
  
 0.556
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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