STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQR97798.1Hypothetical protein. (234 aa)    
Predicted Functional Partners:
icaR_3
Biofilm operon icaADBC HTH-type negative transcriptional regulator IcaR.
 
     0.891
betI
HTH-type transcriptional regulator BetI.
 
     0.685
AQR93500.1
Hypothetical protein.
   
  
 0.418
AQR93516.1
LysM domain/BON superfamily protein.
   
  
 0.418
AQR95571.1
Bacterial SH3 domain protein.
   
  
 0.418
prkA
PrkA AAA domain protein.
   
    0.416
AQR97796.1
EamA-like transporter family protein.
 
     0.413
AQR94267.1
FMN-binding domain protein.
  
     0.405
AQR94117.1
Integrase core domain protein.
  
     0.403
AQR95360.1
Integrase core domain protein.
  
     0.403
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.