STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
spsI_2Bifunctional IPC transferase and DIPP synthase. (231 aa)    
Predicted Functional Partners:
AQR97800.1
Choline/ethanolamine kinase.
  
 0.971
licD
LicD family protein.
 
  
 0.872
lytB_3
Putative endo-beta-N-acetylglucosaminidase precursor.
  
    0.642
lytB_4
Putative endo-beta-N-acetylglucosaminidase precursor.
  
     0.630
AQR97179.1
Cadherin-like beta sandwich domain protein.
  
     0.623
lytA_21
Autolysin.
  
    0.623
lytA_11
Autolysin.
  
    0.622
lytA_25
Autolysin.
  
    0.619
lytA_5
Autolysin.
  
    0.618
lytA_17
Autolysin.
  
    0.612
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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