STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
toxB_4Toxin B. (742 aa)    
Predicted Functional Partners:
AQR95973.1
HIRAN domain protein.
 
     0.763
lytA_10
Autolysin.
  
     0.759
AQR95592.1
Putative cell wall binding repeat protein.
  
   
 0.758
AQR93800.1
Putative cell wall binding repeat protein.
  
   
 0.753
AQR93772.1
Hypothetical protein.
 
    0.746
AQR92871.1
Hypothetical protein.
 
     0.736
AQR94429.1
Hypothetical protein; Glycosyltransferase family 28 C-terminal domain.
  
     0.735
AQR96828.1
Bacterial dynamin-like protein.
  
     0.732
AQR93217.1
Glutathionylspermidine synthase.
  
     0.731
lytA_9
Autolysin.
  
   
 0.717
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.