Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AQR97822.1Hypothetical protein. (331 aa)    
Predicted Functional Partners:
AQR97823.1
F420H2 dehydrogenase subunit F.
       0.776
AQR97821.1
Hypothetical protein.
       0.752
csbB
Putative glycosyltransferase CsbB.
  
  
 0.725
AQR97824.1
Polysaccharide pyruvyl transferase.
       0.703
AQR95611.1
Putative phosphatase regulatory subunit.
  
  
 0.571
copA_2
Copper-exporting P-type ATPase A.
  
    0.496
thiD
Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase.
  
    0.492
opuCA
Glycine betaine/carnitine/choline transport ATP-binding protein OpuCA.
   
    0.447
flg
Hypothetical protein.
   
    0.446
AQR97820.1
Hypothetical protein.
       0.430
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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