STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQR97822.1Hypothetical protein. (331 aa)    
Predicted Functional Partners:
AQR97823.1
F420H2 dehydrogenase subunit F.
       0.780
AQR97821.1
Hypothetical protein.
       0.752
csbB
Putative glycosyltransferase CsbB.
  
  
 0.726
AQR97824.1
Polysaccharide pyruvyl transferase.
       0.702
AQR95611.1
Putative phosphatase regulatory subunit.
  
  
 0.522
copA_2
Copper-exporting P-type ATPase A.
  
    0.508
AQR96637.1
Acetyltransferase (GNAT) family protein.
  
    0.493
thiD
Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase.
  
    0.467
opuCA
Glycine betaine/carnitine/choline transport ATP-binding protein OpuCA.
   
  
 0.464
AQR94628.1
long-chain-fatty-acid--AMP ligase FadD32.
 
   
 0.452
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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