STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQR97823.1F420H2 dehydrogenase subunit F. (391 aa)    
Predicted Functional Partners:
AQR97824.1
Polysaccharide pyruvyl transferase.
     0.957
AQR95081.1
Polysaccharide pyruvyl transferase.
     0.841
dmsA
Dimethyl sulfoxide reductase DmsA precursor; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
 0.821
AQR94372.1
Periplasmic [NiFeSe] hydrogenase large subunit.
  
 0.794
AQR96520.1
Periplasmic [NiFeSe] hydrogenase large subunit.
  
 0.794
gltB_2
Ferredoxin-dependent glutamate synthase 1.
  
 
 0.794
AQR97822.1
Hypothetical protein.
       0.780
AQR97821.1
Hypothetical protein.
       0.752
csbB
Putative glycosyltransferase CsbB.
       0.689
AQR93888.1
Polysaccharide biosynthesis protein.
 
     0.487
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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