Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AQR97830.1Xylose isomerase-like TIM barrel. (261 aa)    
Predicted Functional Partners:
AQR97831.1
Hypothetical protein.
 
   
 0.955
AQR97829.1
FAD dependent oxidoreductase.
 
     0.942
AQR97828.1
Hypothetical protein; Bactoprenol glucosyl transferase homolog from prophage CPS-53.
 
     0.883
arnC_2
Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase.
       0.706
AQR97832.1
GtrA-like protein.
       0.576
AQR93618.1
Hypothetical protein.
  
     0.485
AQR96173.1
Hypothetical protein.
  
     0.456
rhaB
Rhamnulokinase.
 
 
 0.430
rhaD
Rhamnulose-1-phosphate aldolase; Catalyzes the reversible cleavage of L-rhamnulose-1-phosphate to dihydroxyacetone phosphate (DHAP) and L-lactaldehyde.
 
  
 0.424
AQR97407.1
3-hexulose-6-phosphate synthase.
  
 
  0.418
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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