STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amiAN-acetylmuramoyl-L-alanine amidase AmiA precursor. (356 aa)    
Predicted Functional Partners:
amiC
N-acetylmuramoyl-L-alanine amidase AmiC precursor.
  
  
 
0.924
lytA_9
Autolysin.
     
  0.900
ykuD
Putative L,D-transpeptidase YkuD.
    
 0.666
gluP_2
Rhomboid protease GluP.
  
   0.645
mepH_3
Murein DD-endopeptidase MepH precursor.
 
 
 0.621
ykfA_1
Putative murein peptide carboxypeptidase.
    
 0.616
mccF
Microcin C7 self-immunity protein MccF.
    
 0.616
ykfA_2
Putative murein peptide carboxypeptidase.
    
 0.616
mepH_2
Murein DD-endopeptidase MepH precursor.
  
 
 0.597
bglB-2
Beta-glucosidase BoGH3A precursor.
    
 0.595
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.