Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ALX65528.1 | ALX65999.1 | AB663_000024 | AB663_000843 | DNA polymerase III subunit delta'. | Hypothetical protein. | 0.727 |
ALX65528.1 | dnaA | AB663_000024 | AB663_000858 | DNA polymerase III subunit delta'. | Chromosomal replication initiation protein; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family. | 0.404 |
ALX65528.1 | dnaG | AB663_000024 | AB663_002754 | DNA polymerase III subunit delta'. | Hypothetical protein; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | 0.758 |
ALX65528.1 | recR | AB663_000024 | AB663_000047 | DNA polymerase III subunit delta'. | Recombinase RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. | 0.748 |
ALX65999.1 | ALX65528.1 | AB663_000843 | AB663_000024 | Hypothetical protein. | DNA polymerase III subunit delta'. | 0.727 |
ALX65999.1 | recR | AB663_000843 | AB663_000047 | Hypothetical protein. | Recombinase RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. | 0.969 |
ALX66460.1 | ALX66953.1 | AB663_001654 | AB663_002498 | ATP-dependent DNA helicase II. | ABC transporter. | 0.828 |
ALX66460.1 | ALX67235.1 | AB663_001654 | AB663_003027 | ATP-dependent DNA helicase II. | DNA repair protein RecN; May be involved in recombinational repair of damaged DNA. | 0.517 |
ALX66460.1 | dnaA | AB663_001654 | AB663_000858 | ATP-dependent DNA helicase II. | Chromosomal replication initiation protein; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family. | 0.635 |
ALX66460.1 | dnaG | AB663_001654 | AB663_002754 | ATP-dependent DNA helicase II. | Hypothetical protein; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | 0.460 |
ALX66460.1 | recA | AB663_001654 | AB663_002216 | ATP-dependent DNA helicase II. | Recombinase RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.943 |
ALX66460.1 | recR | AB663_001654 | AB663_000047 | ATP-dependent DNA helicase II. | Recombinase RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. | 0.733 |
ALX66460.1 | ruvA | AB663_001654 | AB663_002569 | ATP-dependent DNA helicase II. | Hypothetical protein; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB. | 0.567 |
ALX66460.1 | uvrC | AB663_001654 | AB663_002859 | ATP-dependent DNA helicase II. | Excinuclease ABC subunit C; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. | 0.895 |
ALX66953.1 | ALX66460.1 | AB663_002498 | AB663_001654 | ABC transporter. | ATP-dependent DNA helicase II. | 0.828 |
ALX66953.1 | ALX67235.1 | AB663_002498 | AB663_003027 | ABC transporter. | DNA repair protein RecN; May be involved in recombinational repair of damaged DNA. | 0.737 |
ALX66953.1 | dnaA | AB663_002498 | AB663_000858 | ABC transporter. | Chromosomal replication initiation protein; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family. | 0.430 |
ALX66953.1 | recA | AB663_002498 | AB663_002216 | ABC transporter. | Recombinase RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.772 |
ALX66953.1 | recR | AB663_002498 | AB663_000047 | ABC transporter. | Recombinase RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. | 0.642 |
ALX66953.1 | ruvA | AB663_002498 | AB663_002569 | ABC transporter. | Hypothetical protein; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB. | 0.694 |
page 1 of 4