Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ALX66136.1Hypothetical protein. (422 aa)    
Predicted Functional Partners:
ALX66135.1
ABC transporter permease.
 
  0.849
ALX66133.1
Hypothetical protein.
  
     0.741
ALX65613.1
Hypothetical protein.
  
  0.669
ALX66101.1
Hypothetical protein.
  
  
  0.597
ALX66100.1
Hypothetical protein.
  
  
  0.586
ALX65934.1
Sugar ABC transporter substrate-binding protein.
  
  
  0.577
ALX65804.1
ABC transporter.
  
 
  0.554
ALX66083.1
Hypothetical protein.
   
 
 0.544
ALX66551.1
Hypothetical protein.
   
 
 0.543
ALX66165.1
ABC-type sugar transport system,periplasmic component.
  
  
  0.535
Your Current Organism:
Microbacterium sp. XT11
NCBI taxonomy Id: 367477
Other names: M. sp. XT11
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