ALX66137.1 protein (Microbacterium sp. XT11)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ALX66137.1

ROK family protein. (334 aa)

Predicted Functional Partners:

ALX66089.1

0.929

ALX66494.1

0.928

ALX67071.1

0.906

pgi

0.906

ALX65689.1

0.904

ALX65764.1

0.903

tal

0.823

xylA

0.815

ALX65842.1

0.812

zwf

0.812

Your Current Organism:

Microbacterium sp. XT11

NCBI taxonomy Id: 367477
Other names: M. sp. XT11

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ALX65689.1	ALX65764.1	AB663_000350	AB663_000459	Phosphoglucomutase.	Thermophilic glucose-6-phosphate isomerase.	0.900
ALX65689.1	ALX65842.1	AB663_000350	AB663_000592	Phosphoglucomutase.	Glucose-6-phosphate 1-dehydrogenase.	0.904
ALX65689.1	ALX66089.1	AB663_000350	AB663_000985	Phosphoglucomutase.	Hypothetical protein.	0.904
ALX65689.1	ALX66137.1	AB663_000350	AB663_001060	Phosphoglucomutase.	ROK family protein.	0.904
ALX65689.1	ALX66494.1	AB663_000350	AB663_001697	Phosphoglucomutase.	Hypothetical protein.	0.915
ALX65689.1	ALX67071.1	AB663_000350	AB663_002722	Phosphoglucomutase.	Glucose-6-phosphate isomerase; Belongs to the GPI family.	0.979
ALX65689.1	pgi	AB663_000350	AB663_003299	Phosphoglucomutase.	Glucose-6-phosphate isomerase; Belongs to the GPI family.	0.986
ALX65689.1	tal	AB663_000350	AB663_002721	Phosphoglucomutase.	Hypothetical protein; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the transaldolase family. Type 2 subfamily.	0.923
ALX65689.1	zwf	AB663_000350	AB663_002723	Phosphoglucomutase.	Glucose 6-phosphate dehydrogenase; Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone.	0.904
ALX65764.1	ALX65689.1	AB663_000459	AB663_000350	Thermophilic glucose-6-phosphate isomerase.	Phosphoglucomutase.	0.900
ALX65764.1	ALX65842.1	AB663_000459	AB663_000592	Thermophilic glucose-6-phosphate isomerase.	Glucose-6-phosphate 1-dehydrogenase.	0.900
ALX65764.1	ALX66089.1	AB663_000459	AB663_000985	Thermophilic glucose-6-phosphate isomerase.	Hypothetical protein.	0.903
ALX65764.1	ALX66137.1	AB663_000459	AB663_001060	Thermophilic glucose-6-phosphate isomerase.	ROK family protein.	0.903
ALX65764.1	ALX66494.1	AB663_000459	AB663_001697	Thermophilic glucose-6-phosphate isomerase.	Hypothetical protein.	0.903
ALX65764.1	ALX67071.1	AB663_000459	AB663_002722	Thermophilic glucose-6-phosphate isomerase.	Glucose-6-phosphate isomerase; Belongs to the GPI family.	0.903
ALX65764.1	pgi	AB663_000459	AB663_003299	Thermophilic glucose-6-phosphate isomerase.	Glucose-6-phosphate isomerase; Belongs to the GPI family.	0.903
ALX65764.1	tal	AB663_000459	AB663_002721	Thermophilic glucose-6-phosphate isomerase.	Hypothetical protein; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the transaldolase family. Type 2 subfamily.	0.903
ALX65764.1	zwf	AB663_000459	AB663_002723	Thermophilic glucose-6-phosphate isomerase.	Glucose 6-phosphate dehydrogenase; Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone.	0.900
ALX65842.1	ALX65689.1	AB663_000592	AB663_000350	Glucose-6-phosphate 1-dehydrogenase.	Phosphoglucomutase.	0.904
ALX65842.1	ALX65764.1	AB663_000592	AB663_000459	Glucose-6-phosphate 1-dehydrogenase.	Thermophilic glucose-6-phosphate isomerase.	0.900