Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ALX66163.1Hypothetical protein. (951 aa)    
Predicted Functional Partners:
ALX66692.1
Hypothetical protein.
  
 
 0.962
ALX66213.1
beta-D-glucosideglucohydrolase.
 
  
 0.924
ALX66173.1
Beta-glucosidase.
  
 
 0.919
ALX66223.1
Hypothetical protein; Belongs to the glycosyl hydrolase 1 family.
  
 
 0.919
ALX66487.1
Hypothetical protein.
  
 
 0.919
AMB17207.1
Xylan 1,4-beta-xylosidase.
    
 0.909
ALX66251.1
Hypothetical protein.
    
 0.909
ALX66316.1
Hypothetical protein; Belongs to the glycosyl hydrolase 3 family.
    
 0.909
ALX66785.1
Beta glycosidase.
    
 0.909
ALX65742.1
Arabinan endo-1,5-alpha-L-arabinosidase.
 
  
 0.766
Your Current Organism:
Microbacterium sp. XT11
NCBI taxonomy Id: 367477
Other names: M. sp. XT11
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