STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALX66410.1ABC transporter. (253 aa)    
Predicted Functional Partners:
ALX66411.1
Hypothetical protein.
 
 0.998
ALX67207.1
Protein of unknown function DUF214.
 
 0.984
ALX66417.1
Hypothetical protein.
   
 
  0.901
ALX67331.1
Hypothetical protein.
 
 
 0.863
ALX66412.1
Hypothetical protein; Belongs to the ComB family.
  
    0.573
ALX66699.1
Hypothetical protein.
  
 
 0.527
ALX67347.1
Hypothetical protein.
  
 
 0.508
ALX66409.1
LuxR family transcriptional regulator.
   
   0.454
rpsK
SSU ribosomal protein S11p (S14e); Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.
 
   
 0.442
ALX66581.1
UDP pyrophosphate synthase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.
 
  
 0.406
Your Current Organism:
Microbacterium sp. XT11
NCBI taxonomy Id: 367477
Other names: M. sp. XT11
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