Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ALX66677.1Hypothetical protein. (461 aa)    
Predicted Functional Partners:
ALX66287.1
Hypothetical protein.
  
  
 0.689
ALX66473.1
Hypothetical protein.
  
     0.631
ALX66060.1
Hypothetical protein.
  
     0.522
ALX67168.1
Hypothetical protein.
  
     0.488
ALX66774.1
Membrane protein.
  
     0.483
ALX67416.1
Hypothetical protein.
  
   
 0.468
rpmF
50S ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.
 
     0.463
ALX66696.1
Hypothetical protein.
 
     0.443
ALX66671.1
Hypothetical protein.
 
   
 0.439
ALX65804.1
ABC transporter.
  
     0.409
Your Current Organism:
Microbacterium sp. XT11
NCBI taxonomy Id: 367477
Other names: M. sp. XT11
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