Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ALX66784.1ABC-type transporter,integral membrane subunit. (293 aa)    
Predicted Functional Partners:
ALX66783.1
lactose/L-arabinose transport system permease.
 
  0.996
ALX66782.1
lactose/L-arabinose transport system substrate-binding protein.
 
  0.962
ALX66427.1
Binding-protein-dependent transport systems inner membrane component.
 
 0.879
ALX66166.1
ABC-type sugar transport systems,permease components.
 
 0.875
ALX65862.1
Permease component of ABC-type sugar transporter.
 
  0.866
ALX65744.1
Hypothetical protein.
 
  0.845
ALX65935.1
ABC transporter permease.
 
  0.835
ALX66452.1
Hypothetical protein.
 
  0.827
ALX65856.1
Spermidine/putrescine ABC transporter permease.
 
  0.822
ALX66221.1
Hypothetical protein.
 
  0.816
Your Current Organism:
Microbacterium sp. XT11
NCBI taxonomy Id: 367477
Other names: M. sp. XT11
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