Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ALX66411.1 | ALX67207.1 | AB663_001562 | AB663_002968 | Hypothetical protein. | Protein of unknown function DUF214. | 0.551 |
ALX66411.1 | ALX67330.1 | AB663_001562 | AB663_003226 | Hypothetical protein. | ABC transporter. | 0.875 |
ALX66565.1 | ALX66581.1 | AB663_001805 | AB663_001837 | histidyl-tRNA synthetase; Belongs to the class-II aminoacyl-tRNA synthetase family. | UDP pyrophosphate synthase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids. | 0.436 |
ALX66565.1 | ALX67330.1 | AB663_001805 | AB663_003226 | histidyl-tRNA synthetase; Belongs to the class-II aminoacyl-tRNA synthetase family. | ABC transporter. | 0.458 |
ALX66565.1 | rpsK | AB663_001805 | AB663_000142 | histidyl-tRNA synthetase; Belongs to the class-II aminoacyl-tRNA synthetase family. | SSU ribosomal protein S11p (S14e); Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.521 |
ALX66565.1 | serS | AB663_001805 | AB663_001380 | histidyl-tRNA synthetase; Belongs to the class-II aminoacyl-tRNA synthetase family. | seryl-tRNA synthetase; Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L- seryl-tRNA(Sec), which will be further converted into selenocysteinyl- tRNA(Sec). | 0.554 |
ALX66581.1 | ALX66565.1 | AB663_001837 | AB663_001805 | UDP pyrophosphate synthase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids. | histidyl-tRNA synthetase; Belongs to the class-II aminoacyl-tRNA synthetase family. | 0.436 |
ALX66581.1 | ALX67330.1 | AB663_001837 | AB663_003226 | UDP pyrophosphate synthase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids. | ABC transporter. | 0.455 |
ALX66699.1 | ALX67207.1 | AB663_002036 | AB663_002968 | Hypothetical protein. | Protein of unknown function DUF214. | 0.892 |
ALX66699.1 | ALX67330.1 | AB663_002036 | AB663_003226 | Hypothetical protein. | ABC transporter. | 0.563 |
ALX67207.1 | ALX66411.1 | AB663_002968 | AB663_001562 | Protein of unknown function DUF214. | Hypothetical protein. | 0.551 |
ALX67207.1 | ALX66699.1 | AB663_002968 | AB663_002036 | Protein of unknown function DUF214. | Hypothetical protein. | 0.892 |
ALX67207.1 | ALX67330.1 | AB663_002968 | AB663_003226 | Protein of unknown function DUF214. | ABC transporter. | 0.985 |
ALX67207.1 | ALX67331.1 | AB663_002968 | AB663_003228 | Protein of unknown function DUF214. | Hypothetical protein. | 0.496 |
ALX67207.1 | ALX67347.1 | AB663_002968 | AB663_003248 | Protein of unknown function DUF214. | Hypothetical protein. | 0.839 |
ALX67330.1 | ALX66411.1 | AB663_003226 | AB663_001562 | ABC transporter. | Hypothetical protein. | 0.875 |
ALX67330.1 | ALX66565.1 | AB663_003226 | AB663_001805 | ABC transporter. | histidyl-tRNA synthetase; Belongs to the class-II aminoacyl-tRNA synthetase family. | 0.458 |
ALX67330.1 | ALX66581.1 | AB663_003226 | AB663_001837 | ABC transporter. | UDP pyrophosphate synthase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids. | 0.455 |
ALX67330.1 | ALX66699.1 | AB663_003226 | AB663_002036 | ABC transporter. | Hypothetical protein. | 0.563 |
ALX67330.1 | ALX67207.1 | AB663_003226 | AB663_002968 | ABC transporter. | Protein of unknown function DUF214. | 0.985 |
page 1 of 2