STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Abu_1043Conserved hypothetical protein. (206 aa)    
Predicted Functional Partners:
Abu_1042
NADP-dependent alcohol dehydrogenase; Pfam matches to PF00107 ADH_zinc_N, score 117.2, E-value 4.1E-032, and to PF08240 ADH_N, score 74.1, E-value 4E-019.
       0.689
Abu_1734
Hypothetical protein.
  
     0.577
Abu_1735
Conserved hypothetical protein, putative cytochrome.
  
     0.566
Abu_1040
Sigma factor, ECF family; Pfam match to PF08281 Sigma70_r4_2, score 50.3, E-value 6.8E-014; Belongs to the sigma-70 factor family. ECF subfamily.
       0.505
Abu_1041
Sigma factor regulatory protein, FecR/PupR family; Pfam match to PF04773 FecR, score 56.7, E-value 7.1E-014.
       0.505
Abu_2319
PAP2 superfamily protein.
  
     0.495
Abu_0462
Outer membrane component of efflux system; Pfam match to PF02321 OEP, score 47.4, E-value 4.3E-011.
  
     0.470
Abu_1039
ABC transporter, ATP-binding protein; Pfam match to PF00005 ABC_tran, score 79.8, E-value 7.6E-021.
 
     0.470
Abu_0724
Conserved hypothetical protein; Pfam match to PF03171 2OG-FeII_Oxy, score 41.9, E-value 2E-009.
  
     0.443
Abu_2304
Conserved hypothetical protein, putative succinylglutamate desuccinylase/aspartoacylase.
  
     0.441
Your Current Organism:
Arcobacter butzleri
NCBI taxonomy Id: 367737
Other names: A. butzleri RM4018, Arcobacter butzleri RM4018, Arcobacter butzleri str. RM4018, Arcobacter butzleri strain RM4018
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