STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Abu_1113Hypothetical protein; Pfam match to PF00929 Exonuc_X-T, score 20.6, E-value 1.7E-005. (171 aa)    
Predicted Functional Partners:
dnaE
DNA polymerase III, alpha subunit; Pfam matches to PF07733 DNA_pol3_alpha, score 935.2, E-value 2.4E-278, and to PF02811 PHP, score 255.4, E-value 9.8E-075.
   
 0.947
dnaN
DNA polymerase III, beta subunit; Pfam matches to PF00712 DNA_pol3_beta, score 79.7, E-value 8.1E-021, and to PF02767 DNA_pol3_beta_2, score 52.1, E-value 1.9E-015.
  
 0.944
Abu_0240
Conserved hypothetical protein; Pfam match to PF06144 DNA_pol3_delta, score -22.1, E-value 6E-005.
    
 0.930
dnaX
DNA polymerase III, gamma and tau subunits; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity.
   
 0.930
holB
Putative DNA polymerase III delta prime subunit HolB.
   
 0.930
dnaQ1
DNA polymerase III, epsilon subunit; Pfam match to PF00929 Exonuc_X-T, score 100.8, E-value 3.7E-027.
     
  0.900
dnaQ2
DNA polymerase III, epsilon subunit; Pfam match to PF00929 Exonuc_X-T, score 95, E-value 2E-025.
     
  0.900
dnaQ3
DNA polymerase III; Pfam match to PF00929 Exonuc_X-T, score 128.2, E-value 2.1E-035.
     
  0.900
dnaQ4
DNA polymerase III, epsilon subunit; Pfam match to PF00929 Exonuc_X-T, score 51.6, E-value 2.4E-012.
     
  0.900
Abu_1112
Conserved hypothetical protein.
       0.558
Your Current Organism:
Arcobacter butzleri
NCBI taxonomy Id: 367737
Other names: A. butzleri RM4018, Arcobacter butzleri RM4018, Arcobacter butzleri str. RM4018, Arcobacter butzleri strain RM4018
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.