STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Abu_1405McrBC catalytic subunit McrC, putative. (387 aa)    
Predicted Functional Partners:
Abu_1404
McrBC endonuclease McrB, putative; Pfam match to PF07728 AAA_5, score 39.6, E-value 2.5E-011.
 
 
 0.996
hypC
Hydrogenase expression/formation protein HypC; Pfam match to PF01455 HupF_HypC, score 90.7, E-value 3.9E-024.
   
   0.778
hypE
Hydrogenase expression/formation protein HypE; Pfam matches to PF02769 AIRS_C, score 103.6, E-value 5.2E-028, and to PF00586 AIRS, score 100.6, E-value 4.2E-027.
       0.773
Abu_1402
Conserved hypothetical protein.
       0.773
Abu_1403
3-hydroxyisobutyrate dehydrogenase family protein; Pfam match to PF03446 NAD_binding_2, score 259.5, E-value 6.1E-075.
       0.773
hypD
Hydrogenase expression/formation protein HypD; Pfam match to PF01924 HypD, score 696.6, E-value 1.7E-206; Belongs to the HypD family.
       0.773
hypA
Hydrogenase expression/formation protein HypA; Involved in the maturation of [NiFe] hydrogenases. Required for nickel insertion into the metal center of the hydrogenase.
       0.523
hypB
Hydrogenase expression/formation protein HypB; Pfam match to PF02492 cobW, score 191.4, E-value 3.1E-055.
       0.486
Your Current Organism:
Arcobacter butzleri
NCBI taxonomy Id: 367737
Other names: A. butzleri RM4018, Arcobacter butzleri RM4018, Arcobacter butzleri str. RM4018, Arcobacter butzleri strain RM4018
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.