STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pdxHPyridoxamine 5'-phosphate oxidase; Catalyzes the oxidation of either pyridoxine 5'-phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP). (212 aa)    
Predicted Functional Partners:
pdxJ
Pyridoxal phosphate biosynthesis protein; Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino- 2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate.
  
  
 0.934
Abu_1540
EAL/PAS/GGDEF domain protein; Pfam matches to PF00563 EAL, score 200.3, E-value 4.3E-057, and to PF00989 PAS, score 44.3, E-value 6.6E-013, and to PF00990 GGDEF, score -16.3, E-value 7.7E-006.
       0.574
ribAB
Bifunctional GTP cyclohydrolase II / 3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
  
  
 0.435
carB
Carbamoylphosphate synthase, large subunit; Pfam matches to PF02786 CPSase_L_D2, score 376.7, E-value 3.4E-110, and to PF00289 CPSase_L_chain, score 176.2, E-value 7.2E-050, and to PF02787 CPSase_L_D3, score 175.1, E-value 1.6E-049, and to PF02142 MGS, score 103.5, E-value 5.9E-028, and to PF02786 CPSase_L_D2, score 76.2, E-value 1.7E-021, and to PF00289 CPSase_L_chain, score 81.2, E-value 2.9E-021, and to PF02786 CPSase_L_D2, score 43.2, E-value 4.3E-012; Belongs to the CarB family.
 
 
  
 0.435
ribD
Bifunctional riboflavin biosynthesis protein RibD; Pfam match to PF00383 dCMP_cyt_deam_1, score 117.5, E-value 3.5E-032.
      
 0.420
pyrB
Aspartate carbamoyltransferase; Pfam matches to PF02729 OTCace_N, score 168.9, E-value 1.1E-047, and to PF00185 OTCace, score 72.9, E-value 9E-019; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.
      0.416
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
      
 0.410
nnrD
Conserved hypothetical protein, putative carbohydrate kinase; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate deh [...]
     
 0.407
Your Current Organism:
Arcobacter butzleri
NCBI taxonomy Id: 367737
Other names: A. butzleri RM4018, Arcobacter butzleri RM4018, Arcobacter butzleri str. RM4018, Arcobacter butzleri strain RM4018
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.