Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| Abu_1544 | dbpA | Abu_1544 | Abu_1543 | Conserved hypothetical integral membrane protein. | ATP-dependent RNA helicase DbpA; Pfam matches to PF00270 DEAD, score 234.8, E-value 1.7E-067, and to PF00271 Helicase_C, score 104.1, E-value 1.9E-034, and to PF03880 DbpA, score 31.3, E-value 1.3E-006; Belongs to the DEAD box helicase family. | 0.779 |
| atpD | dbpA | Abu_1595 | Abu_1543 | ATP synthase F1 sector, beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits; Belongs to the ATPase alpha/beta chains family. | ATP-dependent RNA helicase DbpA; Pfam matches to PF00270 DEAD, score 234.8, E-value 1.7E-067, and to PF00271 Helicase_C, score 104.1, E-value 1.9E-034, and to PF03880 DbpA, score 31.3, E-value 1.3E-006; Belongs to the DEAD box helicase family. | 0.677 |
| atpD | fus | Abu_1595 | Abu_1987 | ATP synthase F1 sector, beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits; Belongs to the ATPase alpha/beta chains family. | Translational elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 [...] | 0.916 |
| atpD | pnp | Abu_1595 | Abu_1183 | ATP synthase F1 sector, beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits; Belongs to the ATPase alpha/beta chains family. | Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | 0.422 |
| atpD | rplC | Abu_1595 | Abu_0752 | ATP synthase F1 sector, beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits; Belongs to the ATPase alpha/beta chains family. | Pfam match to PF00297 Ribosomal_L3, score 56.2, E-value 9.6E-014. | 0.579 |
| atpD | rplM | Abu_1595 | Abu_0094 | ATP synthase F1 sector, beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits; Belongs to the ATPase alpha/beta chains family. | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.410 |
| atpD | rplX | Abu_1595 | Abu_0763 | ATP synthase F1 sector, beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits; Belongs to the ATPase alpha/beta chains family. | 50S ribosomal protein L24; One of two assembly initiator proteins, it binds directly to the 5'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 0.790 |
| atpD | rpoB | Abu_1595 | Abu_1884 | ATP synthase F1 sector, beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits; Belongs to the ATPase alpha/beta chains family. | DNA-directed RNA polymerase, beta chain; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.987 |
| atpD | rpoC | Abu_1595 | Abu_1883 | ATP synthase F1 sector, beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits; Belongs to the ATPase alpha/beta chains family. | DNA-directed RNA polymerase, beta' chain; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.987 |
| dbpA | Abu_1544 | Abu_1543 | Abu_1544 | ATP-dependent RNA helicase DbpA; Pfam matches to PF00270 DEAD, score 234.8, E-value 1.7E-067, and to PF00271 Helicase_C, score 104.1, E-value 1.9E-034, and to PF03880 DbpA, score 31.3, E-value 1.3E-006; Belongs to the DEAD box helicase family. | Conserved hypothetical integral membrane protein. | 0.779 |
| dbpA | atpD | Abu_1543 | Abu_1595 | ATP-dependent RNA helicase DbpA; Pfam matches to PF00270 DEAD, score 234.8, E-value 1.7E-067, and to PF00271 Helicase_C, score 104.1, E-value 1.9E-034, and to PF03880 DbpA, score 31.3, E-value 1.3E-006; Belongs to the DEAD box helicase family. | ATP synthase F1 sector, beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits; Belongs to the ATPase alpha/beta chains family. | 0.677 |
| dbpA | fus | Abu_1543 | Abu_1987 | ATP-dependent RNA helicase DbpA; Pfam matches to PF00270 DEAD, score 234.8, E-value 1.7E-067, and to PF00271 Helicase_C, score 104.1, E-value 1.9E-034, and to PF03880 DbpA, score 31.3, E-value 1.3E-006; Belongs to the DEAD box helicase family. | Translational elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 [...] | 0.765 |
| dbpA | nnrD | Abu_1543 | Abu_0166 | ATP-dependent RNA helicase DbpA; Pfam matches to PF00270 DEAD, score 234.8, E-value 1.7E-067, and to PF00271 Helicase_C, score 104.1, E-value 1.9E-034, and to PF03880 DbpA, score 31.3, E-value 1.3E-006; Belongs to the DEAD box helicase family. | Conserved hypothetical protein, putative carbohydrate kinase; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate deh [...] | 0.746 |
| dbpA | pnp | Abu_1543 | Abu_1183 | ATP-dependent RNA helicase DbpA; Pfam matches to PF00270 DEAD, score 234.8, E-value 1.7E-067, and to PF00271 Helicase_C, score 104.1, E-value 1.9E-034, and to PF03880 DbpA, score 31.3, E-value 1.3E-006; Belongs to the DEAD box helicase family. | Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | 0.725 |
| dbpA | rplC | Abu_1543 | Abu_0752 | ATP-dependent RNA helicase DbpA; Pfam matches to PF00270 DEAD, score 234.8, E-value 1.7E-067, and to PF00271 Helicase_C, score 104.1, E-value 1.9E-034, and to PF03880 DbpA, score 31.3, E-value 1.3E-006; Belongs to the DEAD box helicase family. | Pfam match to PF00297 Ribosomal_L3, score 56.2, E-value 9.6E-014. | 0.774 |
| dbpA | rplM | Abu_1543 | Abu_0094 | ATP-dependent RNA helicase DbpA; Pfam matches to PF00270 DEAD, score 234.8, E-value 1.7E-067, and to PF00271 Helicase_C, score 104.1, E-value 1.9E-034, and to PF03880 DbpA, score 31.3, E-value 1.3E-006; Belongs to the DEAD box helicase family. | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.720 |
| dbpA | rplX | Abu_1543 | Abu_0763 | ATP-dependent RNA helicase DbpA; Pfam matches to PF00270 DEAD, score 234.8, E-value 1.7E-067, and to PF00271 Helicase_C, score 104.1, E-value 1.9E-034, and to PF03880 DbpA, score 31.3, E-value 1.3E-006; Belongs to the DEAD box helicase family. | 50S ribosomal protein L24; One of two assembly initiator proteins, it binds directly to the 5'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 0.731 |
| dbpA | rpoB | Abu_1543 | Abu_1884 | ATP-dependent RNA helicase DbpA; Pfam matches to PF00270 DEAD, score 234.8, E-value 1.7E-067, and to PF00271 Helicase_C, score 104.1, E-value 1.9E-034, and to PF03880 DbpA, score 31.3, E-value 1.3E-006; Belongs to the DEAD box helicase family. | DNA-directed RNA polymerase, beta chain; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.890 |
| dbpA | rpoC | Abu_1543 | Abu_1883 | ATP-dependent RNA helicase DbpA; Pfam matches to PF00270 DEAD, score 234.8, E-value 1.7E-067, and to PF00271 Helicase_C, score 104.1, E-value 1.9E-034, and to PF03880 DbpA, score 31.3, E-value 1.3E-006; Belongs to the DEAD box helicase family. | DNA-directed RNA polymerase, beta' chain; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.890 |
| fus | atpD | Abu_1987 | Abu_1595 | Translational elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 [...] | ATP synthase F1 sector, beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits; Belongs to the ATPase alpha/beta chains family. | 0.916 |
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