Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
BAD_0109COG family: glycosyltransferases involved in cellwall biogenesis; Orthologue of BL0438; PFAM_ID: Glycos_transf_2. (343 aa)    
Predicted Functional Partners:
BAD_0110
COG family: transcriptional regulator; Orthologue of BL0437; PFAM_ID:tetR.
       0.600
BAD_0404
COG family: glycosyltransferases involved in cellwall biogenesis; Orthologue of BL1674; PFAM_ID: Glycos_transf_2.
 
 
  0.518
BAD_0171
Narrowly conserved hypothetical membrane protein; COG family: uncharacterized membrane protein; Orthologue of BL0476.
 
 
 0.513
BAD_1597
PTS system cellobiose-specific IIC component; Orthologue of STH952.
 
     0.486
fmt
methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.
  
 
 0.430
rmlCD
dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose.
  
  
 0.411
Your Current Organism:
Bifidobacterium adolescentis
NCBI taxonomy Id: 367928
Other names: B. adolescentis ATCC 15703, Bifidobacterium adolescentis ATCC 15703, Bifidobacterium adolescentis str. ATCC 15703, Bifidobacterium adolescentis strain ATCC 15703
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