Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BAD_0147Hypothetical protein; Orthologue of CE1245. (260 aa)    
Predicted Functional Partners:
BAD_0148
Putative transposase; Orthologue of CE1244.
 
   0.953
BAD_0878
Putative transposase; Orthologue of CE1244.
 
   0.804
BAD_1375
Putative transposase; Orthologue of CE1244.
 
   0.804
BAD_1177
Putative transposase; Orthologue of CE1244.
 
   0.767
dnaB
Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily.
  
 
 0.675
BAD_0149
Large protein with C-terminal homology to alpha-arabinofuranosidase II; Orthologue of BL0184; Belongs to the glycosyl hydrolase 43 family.
       0.534
BAD_0150
COG family: transcriptional regulators; Orthologue of BL0185; PFAM_ID: Peripla_BP_like; PFAM_ID:lacI.
       0.527
BAD_0151
Hypothetical protein; Identified by Glimmer2; putative; Orthologue of BMAA0057.
       0.527
BAD_0152
exo-alpha-L-arabinofuranosidase II; Orthologue of BL0187; Belongs to the glycosyl hydrolase 43 family.
       0.460
Your Current Organism:
Bifidobacterium adolescentis
NCBI taxonomy Id: 367928
Other names: B. adolescentis ATCC 15703, Bifidobacterium adolescentis ATCC 15703, Bifidobacterium adolescentis str. ATCC 15703, Bifidobacterium adolescentis strain ATCC 15703
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