STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAD_0160Possible pre-pilin peptidase; COG family: membrane-associated phospholipidphosphatase; Orthologue of BL0486; PFAM_ID: PAP2. (363 aa)    
Predicted Functional Partners:
rplF
50S ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
  0.832
BAD_0661
Hypothetical protein; Orthologue of BL1006.
  
     0.769
BAD_1320
Hypothetical protein; Orthologue of BL1206.
 
     0.769
BAD_0359
Hypothetical protein; Orthologue of BL1621.
  
     0.762
BAD_1126
Hypothetical protein; Orthologue of BCZK0765.
  
     0.760
BAD_0526
COG family: predicted glycosyltransferases; Orthologue of BL1104; PFAM_ID: Glycos_transf_1.
  
 0.759
BAD_0287
Hypothetical protein; COG family: superfamily I DNA and RNA helicases andhelicase subunits; Orthologue of BL1552.
  
     0.753
BAD_0660
Hypothetical protein; COG family: predicted glycosyltransferases; Orthologue of BL1007.
 
   
 0.750
BAD_0555
Hypothetical protein; Orthologue of BL1804.
  
     0.748
BAD_1164
Hypothetical protein; Orthologue of BL0091.
 
 
   0.748
Your Current Organism:
Bifidobacterium adolescentis
NCBI taxonomy Id: 367928
Other names: B. adolescentis ATCC 15703, Bifidobacterium adolescentis ATCC 15703, Bifidobacterium adolescentis str. ATCC 15703, Bifidobacterium adolescentis strain ATCC 15703
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.