STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAD_0500Integral membrane protein; Orthologue of lp_2696. (346 aa)    
Predicted Functional Partners:
pyrE
Orotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP).
  
    0.543
BAD_0499
Possible transport protein; COG family: di- and tricarboxylate transporters; Orthologue of BL1140.
       0.498
BAD_1461
Hypothetical protein; COG family: orotate phosphoribosyltransferase; Orthologue of BL0406.
  
    0.474
BAD_0537
COG family:orotidine-5'-phosphate decarboxylase; Omp decarboxylase; Ompdcase; Orthologue of BL0069.
  
    0.468
pyrF
COG family:orotidine-5'-phosphate decarboxylase; OMP decarboxylase; Orthologue of BL0791; Belongs to the OMP decarboxylase family. Type 2 subfamily.
  
    0.468
BAD_0501
Translation elongation factors; GTPase; Orthologue of LBA0051.
       0.436
Your Current Organism:
Bifidobacterium adolescentis
NCBI taxonomy Id: 367928
Other names: B. adolescentis ATCC 15703, Bifidobacterium adolescentis ATCC 15703, Bifidobacterium adolescentis str. ATCC 15703, Bifidobacterium adolescentis strain ATCC 15703
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.