Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
BAD_0773COG family: membrane proteins related tometalloendopeptidases; Orthologue of BL1497; PFAM_ID: Peptidase_M37. (207 aa)    
Predicted Functional Partners:
fadD4
Probable long-chain-fatty-acid--CoA ligase; COG family: long-chain acyl-CoA synthetases(AMP-forming); Orthologue of BL1748; PFAM_ID: AMP-binding.
       0.638
BAD_0571
Hypothetical protein; Orthologue of BL0008.
  
     0.582
BAD_1004
Hypothetical protein; Orthologue of BL1437.
  
     0.577
BAD_0913
Hypothetical protein; Orthologue of BL1050.
  
     0.569
BAD_1162
Hypothetical protein; Orthologue of BL0093.
  
     0.549
BAD_0004
Hypothetical protein; Orthologue of BL0636.
  
     0.524
BAD_0029
Hypothetical protein; Orthologue of BL0598.
  
     0.513
BAD_0249
Hypothetical protein; COG family: regulator of polyketide synthaseexpression; Orthologue of BL1531.
  
     0.468
rpoZ
RNA polymerase omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
  
   
 0.462
whiA
Hypothetical protein; Involved in cell division and chromosome segregation.
  
    0.457
Your Current Organism:
Bifidobacterium adolescentis
NCBI taxonomy Id: 367928
Other names: B. adolescentis ATCC 15703, Bifidobacterium adolescentis ATCC 15703, Bifidobacterium adolescentis str. ATCC 15703, Bifidobacterium adolescentis strain ATCC 15703
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