Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
BAD_0891ATP binding protein of ABC transporter similar to Vex1; COG family: ABC-type transport systems_ involved inlipoprotein release_ permease components; Orthologue of BL0268; PFAM_ID: DUF214. (404 aa)    
Predicted Functional Partners:
BAD_0892
ATP binding protein of ABC transporter similar to Vex2; COG family: ABC-type transport systems_ involved inlipoprotein release_ ATPase components; Orthologue of BL0267; PFAM_ID: ABC_tran.
 
  0.974
BAD_0890
ABC-type transporter similar to Vex3; COG family: ABC-type transport systems_ involved inlipoprotein release_ permease components; Orthologue of BL0269; PFAM_ID: DUF214.
 
    
0.865
BAD_1518
COG family: ABC-type transport systems_ involved inlipoprotein release_ permease components.
  
     0.774
BAD_0889
MFS permease; Orthologue of BTH_I1000.
       0.773
BAD_0931
ABC transporter domain protein; Identified by match to protein family HMM PF00005; Orthologue of BCE2757.
 
  0.719
BAD_0694
Hypothetical protein; Orthologue of BL0889.
 
    0.695
BAD_1519
Possible ATP binding protein of ABC transporter; COG family: ABC-type sugar (aldose) transportsystem_ ATPase component; COG family: ABC-type transport systems_ involved inlipoprotein release_ permease components; Orthologue of BL0197; PFAM_ID: ABC_tran.
 
  0.678
BAD_0486
ABC transporter; ATP-binding protein; Identified by sequence similarity; Orthologue of Lxx18820.
 
  0.622
BAD_0810
Hypothetical protein; Orthologue of BL0734.
  
     0.597
BAD_0696
COG family: ABC-type transport systems_ involved inlipoprotein release_ ATPase components; Orthologue of BL0887; PFAM_ID: ABC_tran.
  
   0.575
Your Current Organism:
Bifidobacterium adolescentis
NCBI taxonomy Id: 367928
Other names: B. adolescentis ATCC 15703, Bifidobacterium adolescentis ATCC 15703, Bifidobacterium adolescentis str. ATCC 15703, Bifidobacterium adolescentis strain ATCC 15703
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