Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
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Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
BAD_0905COG family: predicted transcriptional regulators; Orthologue of BL1041a; PFAM_ID: gntR. (179 aa)    
Predicted Functional Partners:
BAD_0904
Multidrug transport protein; Orthologue of lp_0893.
       0.674
fur
Probable metal uptake regulator similar to ferric uptake regulator protein; COG family: Fe2+_Zn2+ uptake regulationproteins; Orthologue of BL1128; PFAM_ID: FUR; Belongs to the Fur family.
   
    0.467
thrC
Threonine synthase; Catalyzes the formation of L-threoninefromO-phospho-L-homoserine; Orthologue of BL1036.
       0.449
ydeC
Hypothetical protein; Orthologue of BSU05150; Similar to transcriptional regulator (AraC_XylSfamily).
  
    0.444
BAD_1569
Sir2-type regulatory protein; COG family: NAD-dependent protein deacetylases_Sir2 family; Orthologue of BL1528; PFAM_ID: SIR2.
  
    0.440
Your Current Organism:
Bifidobacterium adolescentis
NCBI taxonomy Id: 367928
Other names: B. adolescentis ATCC 15703, Bifidobacterium adolescentis ATCC 15703, Bifidobacterium adolescentis str. ATCC 15703, Bifidobacterium adolescentis strain ATCC 15703
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