Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
BAD_0959Hypothetical protein; Identified by Glimmer2; putative; Orthologue of BURPS1710b_2627. (273 aa)    
Predicted Functional Partners:
BAD_0958
COG family: predicted glycosyltransferases; Orthologue of BL0045; PFAM_ID: Glycos_transf_2.
       0.705
BAD_0960
Hypothetical protein; COG family: predicted RNA-binding proteincontaining KH domain_ possibly ribosomal protein; Orthologue of BL0042; PFAM_ID:UPF0044.
       0.422
cbiO
Cobalt import ATP-binding/permease protein cbiO; COG family: ABC-type cobalt transport system_permease component CbiQ and related transporters; Orthologue of BL0043; PFAM_ID: CbiQ; PFAM_ID:ABC_tran.
       0.402
Your Current Organism:
Bifidobacterium adolescentis
NCBI taxonomy Id: 367928
Other names: B. adolescentis ATCC 15703, Bifidobacterium adolescentis ATCC 15703, Bifidobacterium adolescentis str. ATCC 15703, Bifidobacterium adolescentis strain ATCC 15703
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