Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BAD_0972Possible solute binding protein of ABC transporter; COG family: sugar-binding periplasmicproteins_domains; Orthologue of BL0141; PFAM_ID: SBP_bacterial_1. (455 aa)    
Predicted Functional Partners:
msiK-2
ATP binding protein of ABC transporter for sugars; COG family: ABC-typesugar_spermidine_putrescine_iron_thiamine transportsystems_ ATPase component; Orthologue of BL0673; PFAM_ID: ABC_tran; Belongs to the ABC transporter superfamily.
  
 0.910
BAD_1564
Permease of ABC transporter possibly for oligosaccharides; COG family: ABC-type sugar transport systems_permease components; Orthologue of BL0143; PFAM_ID: BPD_transp.
 
  0.903
BAD_1563
Permease of ABC transporter possibly for oligosaccharides; COG family: sugar permeases; Orthologue of BL0144; PFAM_ID: BPD_transp.
 
   0.887
msmF
COG family: ABC-type sugar transport systems_permease components; Orthologue of BL1522; PFAM_ID: BPD_transp.
 
  0.709
msmG
COG family: sugar permeases; Orthologue of BL1523; PFAM_ID:BPD_transp.
 
   0.696
BAD_1562
Hypothetical protein; COG family: 4-hydroxybenzoate polyprenyltransferaseand related prenyltransferases; Orthologue of BL0145.
 
    0.622
aglA-2
Probable alpha-1,4-glucosidase; COG family: glycosidases; Orthologue of BL0529; PFAM_ID:alpha-amylase.
  
    0.618
BAD_0426
Putative binding protein-dependent transporter; Orthologue of SAV4980.
  
  0.584
malF-2
ABC-type sugar transport systems, permease components; Orthologue of TTE0800.
  
  0.582
BAD_0154
COG family: ABC-type sugar transport systems_permease components; Orthologue of BL0189; PFAM_ID: BPD_transp.
   
  0.574
Your Current Organism:
Bifidobacterium adolescentis
NCBI taxonomy Id: 367928
Other names: B. adolescentis ATCC 15703, Bifidobacterium adolescentis ATCC 15703, Bifidobacterium adolescentis str. ATCC 15703, Bifidobacterium adolescentis strain ATCC 15703
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